PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 261aa    MW: 27855.4 Da    PI: 8.2627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-2941081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+++p++      ++q++++ +++k++G++ +l+l++a p++ r+++++sl+y A+ r+ +Pv+G++g++++++++l+q+
  XP_015882967.1   4 SCNGCRVLRKGCSESCPIRPCLqwiksSESQSNATLFLAKFYGRAGLLNLINASPPHLRPATFKSLLYDACGRIVNPVHGSTGLVWSGNWNLCQA 98 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelallkee 100
                     ++e++l +++
  XP_015882967.1  99 AVEAVLNGSQ 108
                     ***9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9933109IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSESCP IRPCLQWIKS SESQSNATLF LAKFYGRAGL LNLINASPPH  60
LRPATFKSLL YDACGRIVNP VHGSTGLVWS GNWNLCQAAV EAVLNGSQIA PVPSELAVSS  120
MSMPFKACDI RHVSRDENSA AYDRLHKVQS RNRFKRSAGK KKPKVELKSE TEVAMESAVD  180
NVGGDGSSCA RLSWSGSASR DSGLTQPPSP GGDSGDADND SRSVETVETS LAKPKPKADG  240
EAGCGDLELE LTLGFGPWSQ V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882967.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9ZW963e-73LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A068TQW53e-97A0A068TQW5_COFCA; Uncharacterized protein
STRINGVIT_17s0000g03720.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-74LOB domain-containing protein 40